| Database or application name | Contents | URL |
| NCBI | Sequences, structures, diseases, publications, and more | http://www.ncbi.nlm.nih.gov |
| EMBL-EBI | Data resources and tools | http://www.ebi.ac.uk |
| PubMed | Biomedical publications | http://www.ncbi.nlm.nih.gov/pubmed |
| Google scholar | Publications | http://scholar.google.co.il |
| Swiss-Prot | Protein knowledgebase | http://www.expasy.ch/sprot |
| PDB | Database of biological macromolecules | http://www.rcsb.org/pdb/home/home.do |
| GeneCards | Database of human genes | http://www.genecards.org |
| GO | Gene ontology database | http://www.geneontology.org |
| NCBI BLAST | All BLAST tools | http://blast.ncbi.nlm.nih.gov/Blast.cgi |
| EMBL-EBI ClustalW | An interface to a multiple sequence alignment program | http://www.ebi.ac.uk/Tools/clustalw2 |
| MAFFT | A server for multiple sequence alignment | http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ |
| PRANK | A server for multiple sequence alignment | http://www.ebi.ac.uk/goldman-srv/webPRANK |
| RAxML | An interface to a phylogeny reconstruction program | http://phylobench.vital-it.ch/raxml-bb/ |
| PhyML | An interface to a phylogeny reconstruction program | http://atgc.lirmm.fr/phyml |
| Prosite | Database of protein domains, families, and functional sites | http://www.expasy.org/prosite |
| UCSC | Genome browser | http://genome.ucsc.edu |
| Ensembl | Genome browser | http://www.ensembl.org |
| ConSeq | A server for the identification of functionally and structurally important residues in protein sequences | http://conseq.tau.ac.il |
| ConSurf | A server for the identification of functionally and structurally important residues in protein structures | http://consurf.tau.ac.il |
| Selecton | A server for the identification of site-specific positive selection & purifying selection | http://selecton.tau.ac.il |
| RasTop | Molecular visualization software | http://www.geneinfinity.org/rastop |
| C alpha match | Rigid pairwise protein structure alignment | http://bioinfo3d.cs.tau.ac.il/c_alpha_match |
| FlexProt | Flexible pairwise protein structure alignment | http://bioinfo3d.cs.tau.ac.il/FlexProt |
| MultiProt | Multiple protein structure alignment | http://bioinfo3d.cs.tau.ac.il/MultiProt |
| DALI | Distance matrix ALIgnment | http://ekhidna.biocenter.helsinki.fi/dali_server |
