| Class | Date | Topic | Presentation | Assignments | Useful stuff |
| Lesson 1 | 06.03.2012 | The genome era - revolutionizing science at the turn of the century |
01Introduction.GenomeEra.ppt | ||
| Lesson 2 | 13.03.2011 | Computational biology - introduction | 02Introduction.ComputationalBiology.ppt | ||
| Lesson 3 | 20.03.2012 | Inside The Genome | 03insideTheGenome.ppt | ||
| Lesson 4 | 27.03.2012 | Statistical concepts, SeqAlignment(part 1) and BLAST(part 1) | 04SeqAlignment.I.BLAST.andPvalue.ppt | ||
| Lesson 5 | 03.04.2012 | SeqAlignment(part 2) and BLAST(part 2) | 05SeqAlignment.II.BLAST.II.pptx | ||
| Lesson 6 | 17.04.2012 | Databases and Blast (lab) | 06Databases_and_Blast.pptx | HW1 due on 01.05 | |
| Lesson | 24.04.2011 | Mid term | MidTerm2012.withAns.doc | ||
| Lesson 7 | 01.05.2011 | MSA and it's applications | 07MSA.and.applications.ppt | ||
| Lesson 8 | 08.05.2012 | Evolution and Phylogeny | 08phylogeny.Evolution.ppt | ||
| Lesson 9 | 15.05.2012 | Homology, Tree Construction (part I) | 09Homology.TreeConstruction_I.ppt |
| Database or application name | Contents | URL |
| NCBI | Sequences, structures, diseases, publications, and more | http://www.ncbi.nlm.nih.gov |
| EMBL-EBI | Data resources and tools | http://www.ebi.ac.uk |
| PubMed | Biomedical publications | http://www.ncbi.nlm.nih.gov/pubmed |
| Google scholar | Publications | http://scholar.google.co.il |
| Swiss-Prot | Protein knowledgebase | http://www.expasy.ch/sprot |
| PDB | Database of biological macromolecules | http://www.rcsb.org/pdb/home/home.do |
| GO | Gene ontology database | http://www.geneontology.org |
| NCBI BLAST | All BLAST tools | http://blast.ncbi.nlm.nih.gov/Blast.cgi |
| EMBL-EBI ClustalW | An interface to a multiple sequence alignment program | http://www.ebi.ac.uk/Tools/clustalw2 |
| PhyML | An interface to a phylogeny reconstruction program | http://atgc.lirmm.fr/phyml |
| Prosite | Database of protein domains, families, and functional sites | http://www.expasy.org/prosite |
| UCSC | Genome browser | http://genome.ucsc.edu |
| Ensembl | Genome browser | http://www.ensembl.org |
| ConSeq | A server for the identification of functionally and structurally important residues in protein sequences | http://conseq.tau.ac.il |
| ConSurf | A server for the identification of functionally and structurally important residues in protein structures | http://consurf.tau.ac.il |
| Selecton | A server for the identification of site-specific positive selection & purifying selection | http://selecton.tau.ac.il |